• LibraryInstallationNetcdf4.7.4

Install libraries used by CLaMS

• Ubuntu 20.04
• ifort 19.0.8
• gcc 9.3.0
• zlib 1.2.11
• HDF5 1.10.6
• netCDF 4.7.4
• netCDF-Fortran 4.5.3

Auf icg1334 liegen zu allen hier beschriebenen Sachen passende ansible-playbooks.

Create new directories

• mkdir /usr/nfs/software/icg1/include_gcc9.3.0
  mkdir /usr/nfs/software/icg1/lib/lib_linux_ifc64_19.0.8_nc4.7.4
  mkdir /usr/nfs/software/icg1/mod/mod_linux_ifc64_19.0.8_nc4.7.4
  cd /usr/nfs/software/icg1/lib
  ln -sf lib_linux_ifc64_19.0.8_nc4.7.4 lib_linux_ifc64_19.0.8
  cd /usr/nfs/software/icg1/mod 
  ln -sf mod_linux_ifc64_19.0.8_nc4.7.4 mod_linux_ifc64_19.0.8

zlib Version 1.2.11

• Install zlib with:

  cd /usr/nfs/software/icg1/local/zlib-1.2.11-gcc9.3.0
  ./configure --prefix=/usr/nfs/software/icg1/local/zlib-1.2.11-gcc9.3.0
  make
  make check
  make install

• Link zlib to CLaMS library directory:

  cd /usr/nfs/software/icg1/lib/lib_linux_ifc64_19.0.8_nc4.7.4
  ln -sf ../../local/zlib-1.2.11-gcc9.3.0/lib/libz.a .

• Link include files:

  cd /usr/nfs/software/icg1/include_gcc9.3.0
  ln -sf ../local/zlib-1.2.11-gcc9.3.0/include/* .

HDF5 Version 1.10.6

The installation of version 1.10.6 does not work. make install breaks with the following error-message:

• usr/bin/install: 'h5redeploy' und '/usr/nfs/software/icg1/local/hdf5-1.10.6/bin/h5redeploy' sind die gleiche Datei

• Install HDF5 with:

  cd /usr/nfs/software/icg1/local/hdf5-1.10.6
  export CC=`which gcc` 
  ./configure --prefix=/usr/nfs/software/icg1/local/hdf5-1.10.6 --with-zlib=/usr/nfs/software/icg1/local/zlib-1.2.11-gcc9.3.0 --disable-shared 2>&1 | tee config.out
  make 2>&1 | tee make.out
  make check 2>&1 | tee make_check.out
  make install 2>&1 | tee make_install.out

• Link HDF5 Libraries to CLaMS library directories:

  cd /usr/nfs/software/icg1/lib/lib_linux_ifc64_19.0.8_nc4.7.4
  ln -sf ../../local/hdf5-1.10.6/lib/libhdf5.a .
  ln -sf ../../local/hdf5-1.10.6/lib/libhdf5_hl.a .

• Link include files:

  cd /usr/nfs/software/icg1/include_gcc9.3.0
  ln -sf ../local/hdf5-1.10.6/include/* .

alternatively HDF5 Version 1.10.5

• Install HDF5 with:

  cd /usr/nfs/software/icg1/local/hdf5-1.10.5-gcc9.3.0
  export CC=`which gcc` 
  ./configure --prefix=/usr/nfs/software/icg1/local/hdf5-1.10.5-gcc9.3.0 --with-zlib=/usr/nfs/software/icg1/local/zlib-1.2.11-gcc9.3.0 --disable-shared 2>&1 | tee config.out
  make 2>&1 | tee make.out
  make check 2>&1 | tee make_check.out
  make install 2>&1 | tee make_install.out

• Link HDF5 Libraries to CLaMS library directories:

  cd /usr/nfs/software/icg1/lib/lib_linux_ifc64_19.0.8_nc4.7.4
  ln -sf ../../local/hdf5-1.10.5-gcc9.3.0/lib/libhdf5.a .
  ln -sf ../../local/hdf5-1.10.5-gcc9.3.0/lib/libhdf5_hl.a .

• Link include files:

  cd /usr/nfs/software/icg1/include_gcc9.3.0
  ln -sf ../local/hdf5-1.10.5-gcc9.3.0/include/* .

netCDF Version 4.7.4

• Install NetCDF C-library with:

  export CC=`which gcc`
  export CFLAGS=-O
  export CPPFLAGS="-DNDEBUG -DpgiFortran -I/usr/nfs/software/icg1/include_gcc9.3.0"
  export CXX=`which g++`
  export LDFLAGS=-L/usr/nfs/software/icg1/lib/lib_linux_ifc64_19.0.8_nc4.7.4
  export LIBS="-lhdf5_hl -lhdf5 -lz -ldl"
  mkdir /usr/nfs/software/icg1/local/netcdf-c-4.7.4-install
  
  cd /usr/nfs/software/icg1/local/netcdf-c-4.7.4
  
  ./configure --prefix=/usr/nfs/software/icg1/local/netcdf-4.7.4-install --disable-shared --disable-dap [--enable-benchmarks] 2>&1 | tee configure.out
  
  
  make 2>&1 | tee make.out
  make check  2>&1 | tee make_check.out     => FEHLER !!!
  make install  2>&1 | tee make_install.out

• Link libraries, include files and binaries to CLaMS directories:

  cd /usr/nfs/software/icg1/lib/lib_linux_ifc64_19.0.8_nc4.7.4
  ln -sf ../../local/netcdf-4.7.4-install/lib/libnetcdf.a .
  
  cd /usr/nfs/software/icg1/include_gcc9.3.0
  ln -sf ../local/netcdf-4.7.4-install/include/* .

netCDF-Fortran Version 4.5.3

• Install NetCDF Fortran-library with ifort:

  cd /usr/nfs/software/icg1/local/netcdf-fortran-4.5.3
  
  export NCDIR=/usr/nfs/software/icg1/local/netcdf-4.7.4-install
  export CC=`which gcc`
  export CFLAGS=-O
  export CXX=`which g++`
  export FC=`which ifort`
  export FFLAGS=-O
  export F90=$FC
  export F77=$FC
  export FCFLAGS=$FFLAGS
  export FLIBS=
  export CPPFLAGS="-DNDEBUG -DpgiFortran -I/usr/nfs/software/icg1/include_gcc9.3.0"
  export LD_LIBRARY_PATH=/usr/nfs/software/icg1/lib/lib_linux_ifc64_19.0.8_nc4.7.4
  export LDFLAGS=-L/usr/nfs/software/icg1/lib/lib_linux_ifc64_19.0.8_nc4.7.4
  export NFDIR=/usr/nfs/software/icg1/local/netcdf-fortran-4.5.3-gcc9.3.0-ifc64_19.0.8-install
  export LIBS="-lnetcdf -lhdf5_hl -lhdf5 -lz -ldl"
  
  make distclean
  
  cd /usr/nfs/software/icg1/local/netcdf-fortran-4.5.3
  
  ./configure --prefix=/usr/nfs/software/icg1/local/netcdf-fortran-4.5.3-gcc9.3.0-ifc64_19.0.8-install --disable-shared 2>&1 | tee config.out
  
  make         2>&1 | tee make.out
  make check   2>&1 | tee make-check.out
  make install 2>&1 | tee make-install.out

• Link Fortran library and modules to CLaMS directories:

  cd /usr/nfs/software/icg1/include_gcc9.3.0
  ln -sf ../local/netcdf-fortran-4.5.3-gcc9.3.0-ifc64_19.0.8-install/include/netcdf.inc .
  
  cd /usr/nfs/software/icg1/mod/mod_linux_ifc64_19.0.8_nc4.7.4
  ln -sf ../../local/netcdf-fortran-4.5.3-gcc9.3.0-ifc64_19.0.8-install/include/netcdf.mod .
  ln -sf ../../local/netcdf-fortran-4.5.3-gcc9.3.0-ifc64_19.0.8-install/include/typesizes.mod .
   
  cd /usr/nfs/software/icg1/lib/lib_linux_ifc64_19.0.8_nc4.7.4
  ln -sf ../../local/netcdf-fortran-4.5.3-gcc9.3.0-ifc64_19.0.8-install/lib/libnetcdff.a .

• Compile with:

  ifort -o progname progname.f90 -I/usr/nfs/software/icg1/mod/mod_linux_ifc64_19.0.8_nc4.7.4 -L/usr/nfs/software/icg1/lib/lib_linux_ifc64_19.0.8_nc4.7.4  -lnetcdff -lnetcdf -lhdf5_hl -lhdf5 -lz

Installation of Numerical Recipes

• Create subdirectories (objDir, modDir und libDir) in directory numrec-f90

  cd /usr/nfs/software/icg1/local/numrec-f90
  mkdir lib_linux_ifc64_19.0.8
  mkdir mod_linux_ifc64_19.0.8
  mkdir obj_linux_ifc64_19.0.8

• In Makefile.numrec enter the used fortran compiler and the installation directory names:

  F90=ifort
  objDir=obj_linux_ifc64_19.0.8
  modDir=mod_linux_ifc64_19.0.8
  libDir=lib_linux_ifc64_19.0.8

• Compile and create library

  make -f Makefile.numrec  new

• Link library to CLaMS directory:

  cd /usr/nfs/software/icg1/lib/lib_linux_ifc64_19.0.8_nc4.7.4 
  ln -sf ../../local/numrec-f90/lib_linux_ifc64_19.0.8/libnumrec.a .

• Link module files to CLaMS directory:

  cd /usr/nfs/software/icg1/mod/mod_linux_ifc64_19.0.8_nc4.7.4
  ln -sf ../../local/numrec-f90/mod_linux_ifc64_19.0.8/nr.mod .
  ln -sf ../../local/numrec-f90/mod_linux_ifc64_19.0.8/nrtype.mod .
  ln -sf ../../local/numrec-f90/mod_linux_ifc64_19.0.8/nrutil.mod .

MPICH Library 3.3.2

• Install new MPICH library used by the intel compiler:

      cd /usr/nfs/software/icg1/local/mpich-3.3.2
  
     ./configure --prefix=/usr/nfs/software/icg1/local/mpich-3.3.2-ifort-19.0.8  --disable-shared F77=/opt/intel/bin/ifort FC=/opt/intel/bin/ifort 2>&1 | tee config.out
  
      make 2>&1 | tee make.out
  
      make install 2>&1 | tee install.out

• Wenn neuer Compiler auf allen Workstations installiert:

      ln -sf mpich-3.3.2-ifort-19.0.8 mpich-intel