Differences between revisions 3 and 11 (spanning 8 versions)

CLaMS on JUROPATEST

Software on Juropatest

Access to installed software on JUROPATEST is organized through a hierarchy of modules.
Show what modules are compatible available to load right now (given the toolchain modules you have already loaded):
```
module avail
```

Load a specific version of a module

module load <modulename>/<moduleversion>

List what modules are currently loaded
```
module list
```

Unload a module

module unload <modulename>/<moduleversion>

Unload all modules
```
module purge
```
Find the location of a module within the module hierarchy
```
module spider <modulename>
```
Show how to load NetCDF:
```
module -r spider '.*netCDF.*'
```

Using NetCDF on Juropatest

Loading NetCDF Module

module load intel-para netCDF-Fortran/4.4.2
or
module load intel netCDF-Fortran/4.4.2

Compilerversions loaded by intel-para (21.05.2015):
- gcc-Version 4.9.2 (GCC)
- icc version 15.0.2 (gcc version 4.9.0 compatibility)
- ifort version 15.0.2
If the netcdf module is loaded, "ncdump" and "ncgen" can be used and compilation of programs using netcdf is possible (without specifying any library or include path).

Compile Fortran program with NetCDF:

ifort -o progname progname.f90 -lnetcdff -lnetcdf -lhdf5_hl -lhdf5 -lz

Used Libraries

-  ⇤ ← Revision 3 as of 2015-01-13 11:36:51 → 
  Size: 2144
  Editor: NicoleThomas
  Comment:
+   ← Revision 11 as of 2015-05-21 10:18:44 → ⇥
  Size: 1758
  Editor: NicoleThomas
  Comment:
-Deletions are marked like this.
+Additions are marked like this.
 Line 5:
-== Access to Juropatest ==
+[[ /Access | Access to JUROPATEST ]]
 Line 7:
-The Juropatest system is available by two Login nodes:
 {{{
ssh -X userid@juropatest1.fz-juelich.de
ssh -X userid@juropatest2.fz-juelich.de
}}}
+[[ /CVS | CVS on JUROPATEST ]]

[[ /CompileExecute | Compile and execute CLaMS programs ]]

[[ /Software | Software on JUROPATEST ]]

[[ /Netcdf | Using NetCDF ]]

[[ /Libraries | Used Libraries ]]
-Line 53:
+Line 58:
-Line 57:
+Line 63:
-module load intel-para netCDF-Fortran/4.2
+module load intel-para netCDF-Fortran/4.4.2
-Line 59:
+Line 65:
-module load icc/2015.0.090 ifort/2015.0.090 psmpi/5.1.0-1 netCDF-Fortran/4.2
+module load intel netCDF-Fortran/4.4.2
-Line 62:
+Line 68:
- * Compilerversions loaded by intel-param (08.01.2015):
  * gcc-Version 4.4.7 20120313 (Red Hat 4.4.7-4) (GCC) 
  * icc version 15.0.0 (gcc version 4.4.7 compatibility)
  * ifort version 15.0.0
+ * Compilerversions loaded by intel-para (21.05.2015):
   * gcc-Version 4.9.2 (GCC) 
   * icc version 15.0.2 (gcc version 4.9.0 compatibility)
   * ifort version 15.0.2
-Line 75:
+Line 80:
-== Compile and Execute CLaMS programs on Juropatest ==
-Line 77:
+Line 81:
- * Load following modules
 {{{
module load intel-para netCDF-Fortran/4.2
}}}

 * Add current directory to PATH in .profile:
 {{{
PATH=.:$PATH
export PATH
}}}

 * The libraries used by CLaMS are installed in directory /homec/jicg11/jicg1108

 * The CLaMS programs can be compiled with:
 {{{
make [useMPI=true] progname
}}}