Differences between revisions 12 and 16 (spanning 4 versions)

MESSy/CLaMS: dimensions and representations

The type of channel objects is REAL(DP)
Used parallel decomposition types (dctype)
- DC_BC = 0 ! BROADCAST (IO-PE ONLY) -> no decomposition
- DC_IX = 4 ! INDEX

Deklaration of dimensions and representations

In bmil/messy_main_channel_bi.f90:

Dimensions

  INTEGER, SAVE, PUBLIC :: DIMID_TIME = DIMID_UNDEF
  INTEGER, SAVE, PUBLIC :: DIMID_LEV  = DIMID_UNDEF
  INTEGER, SAVE, PUBLIC :: DIMID_LON  = DIMID_UNDEF
  INTEGER, SAVE, PUBLIC :: DIMID_LAT  = DIMID_UNDEF

  INTEGER, SAVE, PUBLIC :: DIMID_THETA   = DIMID_UNDEF
  INTEGER, SAVE, PUBLIC :: DIMID_TRAJ    = DIMID_UNDEF
  INTEGER, SAVE, PUBLIC :: DIMID_MIX_GRID = DIMID_UNDEF
  INTEGER, SAVE, PUBLIC :: DIMID_NTASKS  = DIMID_UNDEF
  INTEGER, SAVE, PUBLIC :: DIMID_SHUFFLE = DIMID_UNDEF
  INTEGER, SAVE, PUBLIC :: DIMID_SEDI_PARTICLE = DIMID_UNDEF

  INTEGER, SAVE, PUBLIC :: DIMID_WAVE        = DIMID_UNDEF
  INTEGER, SAVE, PUBLIC :: DIMID_DISSOC_LEV  = DIMID_UNDEF
  INTEGER, SAVE, PUBLIC :: DIMID_DISSOC_LEVC = DIMID_UNDEF
  INTEGER, SAVE, PUBLIC :: DIMID_DISSOC_LAT  = DIMID_UNDEF
  INTEGER, SAVE, PUBLIC :: DIMID_DISSOC_SZA  = DIMID_UNDEF
  INTEGER, SAVE, PUBLIC :: DIMID_DISSOC_NUMJ = DIMID_UNDEF

Representations

  INTEGER, SAVE, PUBLIC :: REPR_LG_CLAMS     = REPR_UNDEF
  INTEGER, SAVE, PUBLIC :: REPR_CLAMS_SHUFFLE= REPR_UNDEF
  INTEGER, SAVE, PUBLIC :: REPR_3DINP_CLAMS  = REPR_UNDEF 
  INTEGER, SAVE, PUBLIC :: REPR_NTASKS = REPR_UNDEF
  INTEGER, SAVE, PUBLIC :: REPR_SEDI_PARTICLE = REPR_UNDEF

  INTEGER, SAVE, PUBLIC :: REPR_DISSOC_WAVE  = REPR_UNDEF
  INTEGER, SAVE, PUBLIC :: REPR_DISSOC_LEV   = REPR_UNDEF
  INTEGER, SAVE, PUBLIC :: REPR_DISSOC_LEVC  = REPR_UNDEF
  INTEGER, SAVE, PUBLIC :: REPR_DISSOC_LAT   = REPR_UNDEF
  INTEGER, SAVE, PUBLIC :: REPR_DISSOC_SZA   = REPR_UNDEF
  INTEGER, SAVE, PUBLIC :: REPR_DISSOC_TABS  = REPR_UNDEF
  INTEGER, SAVE, PUBLIC :: REPR_DISSOC_TABS_DAVG = REPR_UNDEF
  INTEGER, SAVE, PUBLIC :: REPR_DISSOC_TWOD  = REPR_UNDEF
  INTEGER, SAVE, PUBLIC :: REPR_DISSOC_TWODC = REPR_UNDEF
  INTEGER, SAVE, PUBLIC :: REPR_DISSOC_RATE  = REPR_UNDEF

Initialize dimensions and representations

In bmil/messy_main_channel_clams.inc:

Dimensions

Initialize with new_dimension

ID	Name	Length
DIMID_TIME	time	1
DIMID_LON	LON	nx
DIMID_LAT	LAT	ny
DIMID_LEV	LEV	nz
DIMID_THETA	THETA	ntheta
DIMID_TRAJ	NPARTS	nparts_max
DIMID_SHUFFLE	NPARTS_SHUFFLE	nparts_max_shuffle
DIMID_MIX_GRID	NLEVS	adapt_par%nlevs
DIMID_NTASKS	ntasks	ntasks
DIMID_WAVE	WAVELENGTH	jpwave
DIMID_DISSOC_LEV	DISSOC_LEV	jpslevall
DIMID_DISSOC_LEVC	DISSOC_LEVC	jpslev
DIMID_DISSOC_LAT	DISSOC_LAT	jpschi
DIMID_DISSOC_SZA	DISSOC_SZA	jpschi
DIMID_DISSOC_NUMJ	DISSOC_NUMJ	numj_max
DIMID_SEDI_PARTICLE	SEDI_PARTICLE	nparticle_max

Dimension variables

Create with add_dimension_variable

Name of dimension variable	Name of dimension	values of dimension variable
time	time	days since starttime
YYYYMMDD	time	yyyymmdd
dt	time	delta_time
nstep	time	REAL(current_time_step, DP)
JULIAN_SECONDS	time	time in julian seconds
LON	LON	longrid
LAT	LAT	latgrid
LEV	LEV	levelgrid(1:nz)
THETA	THETA	thetagrid(1:ntheta)

Representations

Create with new_representation

SCALAR

CALL new_representation(status, SCALAR, 'SCALAR'                 &
     , rank = 0, link = '----', dctype = 0                       &
     , dimension_ids = scdim &
     , ldimlen       = scdim &
     , axis = '----'                                             &
     )

Variables with representation SCALAR:

In messy_clams_si.f90
- grid_switch
- pre_year, pre_month, pre_day, pre_sec
- JULTIME

REPR_NTASKS

CALL new_representation(status, REPR_NTASKS, 'REPR_NTASKS'       &
     , rank = 1, link = 'x---', dctype = DC_IX                   &
     , dimension_ids = (/ DIMID_NTASKS /) &
     , ldimlen       = (/ 1 /) &  INTEGER, SAVE, PUBLIC :: REPR_SEDI_TBOX = REPR_UNDEF
 
     , axis = 'N---'                                             &
     )

Variables with representation REPR_NTASKS in messy_clams_si.f90:
- dnparts
- dnparts_max
one-dimensional array of length NTASKS
index distributed on tasks (dctype=DC_IX), every task can use dnparts and dnparts_max as a scalar

REPR_3DINP_CLAMS

CALL new_representation(status, REPR_3DINP_CLAMS, 'REPR_3DINP_CLAMS' &
     , rank = 3, link = 'xxx-', dctype = 0                           &
     , dimension_ids = (/ DIMID_LON, DIMID_LAT, DIMID_LEV /)         &
     , ldimlen = (/ AUTO, AUTO, AUTO /)                              &
     , axis = 'XYZ-'                                                 &
     )

Variables with this representation in messy_clams_si.f90:
- UDT, VDT, WDT, LEVELDT, DLEVDZDT
- UFUT, VFUT, WFUT, LEVELFUT, DLEVDZFUT
- PREDATA_param, FUTDATA_param (TEMP, PRESS etc.)
3-dimensional arrays (nlev,nlat,nlon), input from meteorological files
- and current winds
no parallel decomposition (dctype=0)

REPR_3DINP_CLAMSTHETA

CALL new_representation(status, REPR_3DINP_CLAMSTHETA, 'REPR_3DINP_CLAMSTHETA' &
     , rank = 3, link = 'xxx-', dctype = 0                           &
     , dimension_ids = (/ DIMID_LON, DIMID_LAT, DIMID_THETA /)         &
     , ldimlen = (/ AUTO, AUTO, AUTO /)                              &
     , axis = 'ZYX-'                                                 &
     )

Variables with this representation in messy_clams_si.f90:
- PREDATA_param, FUTDATA_param (EQLAT and PV)
3-dimensional arrays (nlev,nlat,nlon), input from meteorological files
no parallel decomposition (dctype=0)

REPR_LG_CLAMS
```
CALL new_representation(status, REPR_LG_CLAMS, 'REPR_LG_CLAMS'         &
     , rank = 1, link = 'x---', dctype = DC_IX                 &
     , dimension_ids = (/ DIMID_TRAJ /) &
     , ldimlen       = (/ dnparts_max /) &
     , axis = 'N---'                                           &
     )
```
- Variables with this representation in messy_clams_si.f90:
  - JULSEC
  - LAT, LAT_OLD, LAT_OLD_MIX
  - LON, LON_OLD, LON_OLD_MIX
  - LEV, LEV_OLD
  - param, param_OLD (PRESS,TEMP etc)
  - SPECARR for all species (1-nspec)
  - STATE, STATE_VERT
  - THETA_OLD_MIX, BVFWET_OLD_MIX
- Variables with this representation in messy_dissoc_si.f90:
  - jresult
- Variables with this representation in messy_clamschem_si.f90:
  - BRATES, TRATES, JRATES, HRATES
  - BCONST, TCONST, JCONST, HCONST
  - HETPAR
- One-dimensional arrays of length nparts_max
- Index decomposition (dctype=DC_IX) => every task gets one-dimensional arrays of length dnparts_max
REPR_CLAMS_SHUFFLE
```
CALL new_representation(status, REPR_CLAMS_SHUFFLE, 'REPR_CLAMS_SHUFFLE'  &
     , rank = 1, link = 'x---', dctype = DC_IX                       &
     , dimension_ids = (/ DIMID_SHUFFLE /)                              &
     , ldimlen       = (/ dnparts_max_shuffle /)                              &
     , axis = 'N---'                                                 &
     )
```
- Variables with this representation in messy_clamsmix_si.f90:
  - ZETA_SHUFFLED
  - LAT_SHUFFLED
  - LON_SHUFFLED
  - LAT_OLD_MIX_SHUFFLED
  - LON_OLD_MIX_SHUFFLED
  - STATE_SHUFFLED, STATE_VERT_SHUFFLED
  - species_SHUFFLED (for all species)
  - THETA_SHUFFLED, THETA_OLD_MIX_SHUFFLED
  - BVFWET_SHUFFLED, BVFWET_OLD_MIX_SHUFFLED
- One-dimensional arrays of length nparts_max_shuffle
- Index decomposition (dctype=DX_IX) => every Task gets one-dimensional arrays of length dnparts_max_shuffle

REPR_MIX_GRID

CALL new_representation(status, REPR_MIX_GRID, 'REPR_MIX_GRID'         &
     , rank = 1, link = 'x---', dctype = 0                     &
     , dimension_ids = (/ DIMID_MIX_GRID /) &
     , ldimlen       = (/ adapt_par%nlevs /) &
     , axis = 'N---'                                           &
     )

Variables with this representation in messy_clams_si.f90:
- LEV_GRID
- LEV_DELTA
- R_GRID
One-dimensional arrays of lenght adapt_par%nlevs
No decomposition

REPR_DISSOC_WAVE
REPR_DISSOC_LEV
REPR_DISSOC_LEVC
REPR_DISSOC_SZA
REPR_DISSOC_LAT
REPR_DISSOC_TABS
REPR_DISSOC_TABS_DAVG
REPR_DISSOC_TWOD
REPR_DISSOC_TWODC
REPR_DISSOC_RATE

REPR_SEDI_PARTICLE

    CALL new_representation(status, REPR_SEDI_PARTICLE, 'REPR_SEDI_PARTICLE'  &
         , rank = 1, link = 'x---', dctype = 0                           &
         , dimension_ids = (/ DIMID_SEDI_PARTICLE /)                        &
         , ldimlen       = (/ nparticle_max /)                                &
         , axis = 'N---'                                                 &
         )

-  ⇤ ← Revision 12 as of 2015-12-14 09:21:42 → 
  Size: 10175
  Editor: NicoleThomas
  Comment:
+   ← Revision 16 as of 2018-04-24 10:59:06 → ⇥
  Size: 9857
  Editor: NicoleThomas
  Comment:
-Deletions are marked like this.
+Additions are marked like this.
 Line 42:
-  INTEGER, SAVE, PUBLIC :: REPR_LEVARR_CLAMS = REPR_UNDEF
-Line 44:
+Line 43:
-  INTEGER, SAVE, PUBLIC :: REPR_3DINP_CLAMS2 = REPR_UNDEF
  INTEGER, SAVE, PUBLIC :: REPR_2D_CLAMSTEST = REPR_UNDEF
-Line 151:
+Line 148:
-  * 3-dimensional arrays (nlon,nlat,nlev), used in TRAJ and SEDI
+   * '''PREDATA_param, FUTDATA_param''' (TEMP, PRESS etc.)
  * 3-dimensional arrays (nlev,nlat,nlon), input from meteorological files
    and current winds
-Line 154:
+Line 153:
- * '''REPR_3DINP_CLAMS2'''
 {{{
CALL new_representation(status, REPR_3DINP_CLAMS2, 'REPR_3DINP_CLAMS2' &
+ * '''REPR_3DINP_CLAMSTHETA'''
 {{{
CALL new_representation(status, REPR_3DINP_CLAMSTHETA, 'REPR_3DINP_CLAMSTHETA' &
 Line 158:
-     , dimension_ids = (/ DIMID_LEV, DIMID_LAT, DIMID_LON /)         &
+     , dimension_ids = (/ DIMID_LON, DIMID_LAT, DIMID_THETA /)         &
 Line 164:
-    * '''PREDATA_param, FUTDATA_param''' (TEMP, PRESS etc)
  * 3-dimensional arrays (nlev,nlat,nlon), input from metereological files 
  * no parallel decomposition (dctype=0)


 * '''REPR_3DINP_CLAMSTHETA'''
 {{{
CALL new_representation(status, REPR_3DINP_CLAMSTHETA, 'REPR_3DINP_CLAMSTHETA' &
     , rank = 3, link = 'xxx-', dctype = 0                           &
     , dimension_ids = (/ DIMID_THETA, DIMID_LAT, DIMID_LON /)         &
     , ldimlen = (/ AUTO, AUTO, AUTO /)                              &
     , axis = 'ZYX-'                                                 &
     )
}}}
  * Variables with this representation in ''messy_clams_si.f90'':
-Line 180:
+Line 165:
-  * 3-dimensional arrays (nlev,nlat,nlon), input from metereological files
+  * 3-dimensional arrays (nlev,nlat,nlon), input from meteorological files
-Line 199:
+Line 184:
-    * '''SPECARR''' für alle Spezies (1-nspec)
+    * '''SPECARR''' for all species (1-nspec)
-Line 261:
+Line 246:
- * REPR_SEDI_PARTICLE
+ * '''REPR_SEDI_PARTICLE'''
 {{{
    CALL new_representation(status, REPR_SEDI_PARTICLE, 'REPR_SEDI_PARTICLE'  &
         , rank = 1, link = 'x---', dctype = 0                           &
         , dimension_ids = (/ DIMID_SEDI_PARTICLE /)                        &
         , ldimlen       = (/ nparticle_max /)                                &
         , axis = 'N---'                                                 &
         )
}}}