Install Libraries on JURECA with ifort 19.0.0, gcc 7.3.0 and Parastation MPI

The libraries used by CLaMS are installed in directory /homec/jicg11/jicg1108

load modules

• module purge
  module load intel-para
  module load netCDF-Fortran

create new directories

• mkdir clams_lib_ifort19.0.0
  mkdir clams_mod_ifort19.0.0
  mkdir clams_lib_mpi_ifort19.0.0
  mkdir clams_mod_mpi_ifort19.0.0

qhull

Possibly the name of the C-routine qhull_dll in file unix.c must be adjusted: for gcc it must be qhull_dll_ !

• cd ~/qhull
  make new  
  mv libqhull.a libqhull_gcc7.3.0.a
  
  cd ~/clams_lib_ifort19
  ln -sf ../qhull/libqhull_gcc7.3.0.a ./libqhull.a
  
  cd ~
  chmod -R 755 qhull

numrec

• cd ~/numrec-f90
  
  mkdir lib_ifort19.0.0
  mkdir mod_ifort19.0.0
  mkdir obj_ifort19.0.0

  in Makefile.numrec:

  •    F90 = ifort
       objDir = obj_ifort19.0.0
       modDir = mod_ifort19.0.0
       libDir = lib_ifort19.0.0

  make -f Makefile.numrec  new

  cd ~/clams_lib_ifort19
  ln -sf ../numrec-f90/lib_ifort19.0.0/libnumrec.a .
  
  cd ~/clams_mod_ifort19
  ln -sf ../numrec-f90/mod_ifort19.0.0/nr.mod .
  ln -sf ../numrec-f90/mod_ifort19.0.0/nrtype.mod .
  ln -sf ../numrec-f90/mod_ifort19.0.0/nrutil.mod .
  
  cd ~
  chmod -R 755 numrec-f90

netcdf

• Netcdf is installed on Jureca for different C and Fortran compiler versions.
• If the netcdf module is loaded, "ncdump" and "ncgen" can be used and compilation of programs using netcdf is possible (without specifying any library or include paths).
• Compile Fortran program with NetCDF:

  ifort -o progname progname.f90 -lnetcdff -lnetcdf -lhdf5_hl -lhdf5 -lz

• After loading the netcdf module the following environment variables are expanded:

  • PATH includes directory with netcdf binaries (ncdump)

  • CPATH includes directory with include-files and netcdf-modules

  • LD_LIBRARY_PATH includes directories with all needed libraries (netcdf, hdf5, zlib etc)

utils

• Following files were adapted:
  • utils-cf/Makefile
  • mkincl/platform.mk
  • mkincl/config/config.Linux_ifc
• Serial version of library:

  cd ~/utils-cf
  
  make theLibrary
  
  cd ~/clams_lib_ifort19
  ln -sf ../utils-cf/lib_linux_ifc_19.0.0.117/libutils-icg1.a .
  
  cd ~/clams_mod_ifort19
  ln -sf ../utils-cf/mod_linux_ifc_19.0.0.117/* .
  
  cd ~
  chmod -R 755 utils-cf

• MPI version of library:

  cd ~/utils-cf
  
  make useMPI=true theLibrary
  
  cd ~/clams_lib_mpi_ifort19
  ln -sf ../utils-cf/lib_linux_ifc_19.0.0.117_mpi/libutils-icg1.a .
  
  cd ~/clams_mod_mpi_ifort19
  ln -sf ../utils-cf/mod_linux_ifc_19.0.0.117_mpi/* .
  
  cd ~
  chmod -R 755 utils-cf

set new links

• rm clams_lib clams_mod clams_lib_mpi clams_mod_mpi
  ln -sf clams_lib_ifort19.0.0 clams_lib
  ln -sf clams_mod_ifort19.0.0 clams_mod
  ln -sf clams_lib_mpi_ifort19.0.0 clams_lib_mpi
  ln -sf clams_mod_mpi_ifort19.0.0 clams_mod_mpi