Install Libraries on JUROPATEST
The libraries used by CLaMS are installed in directory /homec/jicg11/jicg1108
qhull
Possibly the name of the C-routine qhull_dll in file unix.c must be adjusted: for gcc it must be qhull_dll_ !
cd ~/qhull make new (Compilation mit gcc, s. Makefile) mv libqhull.a libqhull_gcc4.9.2.a cd ~/clams_lib ln -sf ../qhull/libqhull_gcc4.9.2.a ./libqhull.a cd ~ chmod -R 755 qhull
make theLibrary
numrec
cd ~/numrec-f90 mkdir lib_ifort15.0.2 mkdir mod_ifort15.0.2 mkdir obj_ifort15.0.2
in Makefile.numrec:F90 = ifort objDir = obj_ifort15.0.2 modDir = mod_ifort15.0.2 libDir = lib_ifort15.0.2
make -f Makefile.numrec new
The following error occurs:
catastrophic error: **Internal compiler error: internal abort** Please report this error along with the circumstances in which it occurred in a Software Problem Report. Note: File and line given may not be explicit cause of this error. compilation aborted for src/sprsin.f90 (code 1)=> in Makefile.numrec: sprsin removed from progfilelist !!!
cd ~/clams_lib ln -sf ../numrec-f90/lib_ifort15.0.2/libnumrec.a . cd ~ chmod -R 755 numrec-f90
netcdf
- Netcdf is installed on Juropatest for different C and Fortran compiler versions.
- Load netcdf module:
module load intel-para netCDF-Fortran/4.4.2
- If the netcdf module is loaded, "ncdump" and "ncgen" can be used and compilation of programs using netcdf is possible (without specifying any library or include paths).
- Compile Fortran program with NetCDF:
ifort -o progname progname.f90 -lnetcdff -lnetcdf -lhdf5_hl -lhdf5 -lz
- After loading the netcdf module the following environment variables are expanded:
PATH includes directory with netcdf binaries (ncdump)
CPATH includes directory with include-files and netcdf-modules
LD_LIBRARY_PATH includes directories with all needed libraries (netcdf, hdf5, zlib etc)
utils
- Following files were adapted:
- utils/Makefile
- mkincl/platform.mk
- mkincl/config/config.Linux_ifc
cd ~/utils make theLibrary cd ~/clams_lib ln -sf ../utils/lib_linux_ifc_15.0.2/libutils-icg1.a . cd ~/clams_mod ln -sf ../utils/mod_linux_ifc_15.0.2/* . cd ~ chmod -R 755 utils