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| == Install Libraries on JURECA with ifort 17.0.0 and Parastation MPI == | == Install Libraries on JURECA with ifort 17.0.2 and Parastation MPI == |
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| mkdir lib_ifort17.0.0 mkdir mod_ifort17.0.0 mkdir obj_ifort17.0.0 |
mkdir lib_ifort17.0.2 mkdir mod_ifort17.0.2 mkdir obj_ifort17.0.2 |
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| objDir = obj_ifort17.0.0 modDir = mod_ifort17.0.0 libDir = lib_ifort17.0.0 |
objDir = obj_ifort17.0.2 modDir = mod_ifort17.0.2 libDir = lib_ifort17.0.2 |
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| ln -sf ../numrec-f90/lib_ifort17.0.0/libnumrec.a . | ln -sf ../numrec-f90/lib_ifort17.0.2/libnumrec.a . |
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| ln -sf ../numrec-f90/mod_ifort17.0.0/nr.mod . ln -sf ../numrec-f90/mod_ifort17.0.0/nrtype.mod . ln -sf ../numrec-f90/mod_ifort17.0.0/nrutil.mod . |
ln -sf ../numrec-f90/mod_ifort17.0.2/nr.mod . ln -sf ../numrec-f90/mod_ifort17.0.2/nrtype.mod . ln -sf ../numrec-f90/mod_ifort17.0.2/nrutil.mod . |
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| * utils/Makefile | * utils-cf/Makefile |
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| * Serial version of library: | |
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| cd ~/utils | cd ~/utils-cf |
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| ln -sf ../utils/lib_linux_ifc_17.0.0/libutils-icg1.a . | ln -sf ../utils-cf/lib_linux_ifc_17.0.2/libutils-icg1.a . |
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| ln -sf ../utils/mod_linux_ifc_17.0.0/* . | ln -sf ../utils-cf/mod_linux_ifc_17.0.2/* . |
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| chmod -R 755 utils | chmod -R 755 utils-cf |
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* MPI version of library: {{{ cd ~/utils-cf make useMPI=true theLibrary cd ~/clams_lib_mpi ln -sf ../utils-cf/lib_linux_ifc_17.0.2_mpi/libutils-icg1.a . cd ~/clams_mod_mpi ln -sf ../utils-cf/mod_linux_ifc_17.0.2_mpi/* . cd ~ chmod -R 755 utils-cf }}} |
Install Libraries on JURECA with ifort 17.0.2 and Parastation MPI
The libraries used by CLaMS are installed in directory /homec/jicg11/jicg1108
load modules
module purge module load intel-para module load netCDF-Fortran
qhull
Possibly the name of the C-routine qhull_dll in file unix.c must be adjusted: for gcc it must be qhull_dll_ !
cd ~/qhull make new mv libqhull.a libqhull_gcc5.4.0.a cd ~/clams_lib ln -sf ../qhull/libqhull_gcc5.4.0.a ./libqhull.a cd ~ chmod -R 755 qhull
numrec
cd ~/numrec-f90 mkdir lib_ifort17.0.2 mkdir mod_ifort17.0.2 mkdir obj_ifort17.0.2
in Makefile.numrec:F90 = ifort objDir = obj_ifort17.0.2 modDir = mod_ifort17.0.2 libDir = lib_ifort17.0.2
make -f Makefile.numrec new
The following error occurs:
catastrophic error: **Internal compiler error: internal abort** Please report this error along with the circumstances in which it occurred in a Software Problem Report. Note: File and line given may not be explicit cause of this error. compilation aborted for src/sprsin.f90 (code 1)=> in Makefile.numrec: sprsin removed from progfilelist !!!
cd ~/clams_lib ln -sf ../numrec-f90/lib_ifort17.0.2/libnumrec.a . cd ~/clams_mod ln -sf ../numrec-f90/mod_ifort17.0.2/nr.mod . ln -sf ../numrec-f90/mod_ifort17.0.2/nrtype.mod . ln -sf ../numrec-f90/mod_ifort17.0.2/nrutil.mod . cd ~ chmod -R 755 numrec-f90
netcdf
- Netcdf is installed on Jureca for different C and Fortran compiler versions.
- If the netcdf module is loaded, "ncdump" and "ncgen" can be used and compilation of programs using netcdf is possible (without specifying any library or include paths).
- Compile Fortran program with NetCDF:
ifort -o progname progname.f90 -lnetcdff -lnetcdf -lhdf5_hl -lhdf5 -lz
- After loading the netcdf module the following environment variables are expanded:
PATH includes directory with netcdf binaries (ncdump)
CPATH includes directory with include-files and netcdf-modules
LD_LIBRARY_PATH includes directories with all needed libraries (netcdf, hdf5, zlib etc)
utils
- Following files were adapted:
- utils-cf/Makefile
- mkincl/platform.mk
- mkincl/config/config.Linux_ifc
- Serial version of library:
cd ~/utils-cf make theLibrary cd ~/clams_lib ln -sf ../utils-cf/lib_linux_ifc_17.0.2/libutils-icg1.a . cd ~/clams_mod ln -sf ../utils-cf/mod_linux_ifc_17.0.2/* . cd ~ chmod -R 755 utils-cf
- MPI version of library:
cd ~/utils-cf make useMPI=true theLibrary cd ~/clams_lib_mpi ln -sf ../utils-cf/lib_linux_ifc_17.0.2_mpi/libutils-icg1.a . cd ~/clams_mod_mpi ln -sf ../utils-cf/mod_linux_ifc_17.0.2_mpi/* . cd ~ chmod -R 755 utils-cf