Diff for "Jureca/LibrariesIfort17"

Differences between revisions 1 and 12 (spanning 11 versions)

Install Libraries on JURECA

The libraries used by CLaMS are installed in directory /homec/jicg11/jicg1108

qhull

Possibly the name of the C-routine qhull_dll in file unix.c must be adjusted: for gcc it must be qhull_dll_ !

cd ~/qhull
make new  
mv libqhull.a libqhull_gcc4.9.2.a

cd ~/clams_lib
ln -sf ../qhull/libqhull_gcc4.9.2.a ./libqhull.a

cd ~
chmod -R 755 qhull

make theLibrary

numrec

cd ~/numrec-f90

mkdir lib_ifort15.0.2
mkdir mod_ifort15.0.2
mkdir obj_ifort15.0.2

in Makefile.numrec:

   F90 = ifort
   objDir = obj_ifort15.0.2
   modDir = mod_ifort15.0.2
   libDir = lib_ifort15.0.2

make -f Makefile.numrec  new

The following error occurs:
catastrophic error: **Internal compiler error: internal abort** Please report this error along with the circumstances in which it occurred in a Software Problem Report. Note: File and line given may not be explicit cause of this error. compilation aborted for src/sprsin.f90 (code 1)

=> in Makefile.numrec: sprsin removed from progfilelist !!!

cd ~/clams_lib
ln -sf ../numrec-f90/lib_ifort15.0.2/libnumrec.a .

cd ~/clams_mod
ln -sf ../numrec-f90/mod_ifort15.0.2/nr.mod .
ln -sf ../numrec-f90/mod_ifort15.0.2/nrtype.mod .
ln -sf ../numrec-f90/mod_ifort15.0.2/nrutil.mod .

cd ~
chmod -R 755 numrec-f90

netcdf

Netcdf is installed on Juropatest for different C and Fortran compiler versions.

Load netcdf module:

module load intel-para netCDF-Fortran/4.4.2

If the netcdf module is loaded, "ncdump" and "ncgen" can be used and compilation of programs using netcdf is possible (without specifying any library or include paths).

Compile Fortran program with NetCDF:

ifort -o progname progname.f90 -lnetcdff -lnetcdf -lhdf5_hl -lhdf5 -lz

After loading the netcdf module the following environment variables are expanded:
- PATH includes directory with netcdf binaries (ncdump)
- CPATH includes directory with include-files and netcdf-modules
- LD_LIBRARY_PATH includes directories with all needed libraries (netcdf, hdf5, zlib etc)

utils

Following files were adapted:

utils/Makefile
mkincl/platform.mk
mkincl/config/config.Linux_ifc

cd ~/utils

make theLibrary

cd ~/clams_lib
ln -sf ../utils/lib_linux_ifc_15.0.2/libutils-icg1.a .

cd ~/clams_mod
ln -sf ../utils/mod_linux_ifc_15.0.2/* .

cd ~
chmod -R 755 utils

-  ⇤ ← Revision 1 as of 2015-01-13 09:49:01 → 
  Size: 2079
  Editor: NicoleThomas
  Comment:
+   ← Revision 12 as of 2016-11-23 08:18:06 → ⇥
  Size: 2630
  Editor: NicoleThomas
  Comment:
-Deletions are marked like this.
+Additions are marked like this.
 Line 1:
-== Install Libraries on JUROPATEST ==
+## page was renamed from Juropatest/Libraries
== Install Libraries on JURECA ==
-Line 7:
+Line 8:
+Possibly the name of the C-routine ''qhull_dll'' in file ''unix.c'' must be adjusted:  for gcc it must be '''qhull_dll_''' !
-Line 9:
+Line 12:
-make new  (Compilation mit gcc, s. Makefile)
mv libqhull.a libqhull_gcc4.4.7.a
+make new  
mv libqhull.a libqhull_gcc4.9.2.a
-Line 13:
+Line 16:
-ln -sf ../qhull/libqhull_gcc4.4.7.a ./libqhull.a
+ln -sf ../qhull/libqhull_gcc4.9.2.a ./libqhull.a
-Line 17:
+Line 20:
-}}}
+}}}make theLibrary
-Line 24:
+Line 28:
-mkdir lib_ifort15.0.0
mkdir mod_ifort15.0.0
mkdir obj_ifort15.0.0
+mkdir lib_ifort15.0.2
mkdir mod_ifort15.0.2
mkdir obj_ifort15.0.2
-Line 29:
+Line 33:
-in Makefile.numrec:
 {{{
+ in Makefile.numrec:
  {{{
-Line 32:
+Line 36:
-   objDir = obj_ifort15.0.0
   modDir = mod_ifort15.0.0
   libDir = lib_ifort15.0.0
+   objDir = obj_ifort15.0.2
   modDir = mod_ifort15.0.2
   libDir = lib_ifort15.0.2
-Line 41:
+Line 45:
-catastrophic error: **Internal compiler error: internal abort** Please report this error along with the circumstances in which it occurred in a Software Problem Report.  Note: File and line given may not be explicit cause of this error.
compilation aborted for src/sprsin.f90 (code 1)
=> in Makefile.numrec: sprsin removed from progfilelist  !!!
+ The following error occurs: <<BR>> 
 ''catastrophic error: **Internal compiler error: internal abort** Please report this error along with the circumstances in which it occurred in a Software Problem Report.  Note: File and line given may not be explicit cause of this error. compilation aborted for src/sprsin.f90 (code 1)''

  => in Makefile.numrec: sprsin removed from progfilelist  !!!
-Line 47:
+Line 52:
-ln -sf ../numrec-f90/lib_ifort15.0.0/libnumrec.a .
+ln -sf ../numrec-f90/lib_ifort15.0.2/libnumrec.a .

cd ~/clams_mod
ln -sf ../numrec-f90/mod_ifort15.0.2/nr.mod .
ln -sf ../numrec-f90/mod_ifort15.0.2/nrtype.mod .
ln -sf ../numrec-f90/mod_ifort15.0.2/nrutil.mod .
-Line 50:
+Line 60:
-chmod -R 755 numrec
+chmod -R 755 numrec-f90
-Line 57:
+Line 67:
- * If the netcdf module is loaded, "ncdump" and "ncgen" can be used and compilation of programs using netcdf is possible (without specifying any library or include path).
+ * Load netcdf module:
 {{{
module load intel-para netCDF-Fortran/4.4.2
}}}

 * If the netcdf module is loaded, "ncdump" and "ncgen" can be used and compilation of programs using netcdf is possible (without specifying any library or include paths).
-Line 64:
+Line 79:
- * Environment variables
+ * After loading the netcdf module the following environment variables are expanded:
-Line 72:
+Line 87:
-geändert:
Makefile
mkincl/platform.mk
mkincl/config/config.Linux_ifc
=> eingecheckt am 13.01.2015
+ Following files were adapted:
  * utils/Makefile
  * mkincl/platform.mk
  * mkincl/config/config.Linux_ifc

 {{{
cd ~/utils
-Line 81:
+Line 99:
-ln -sf ../utils/lib_linux_ifc_15.0.0/libutils-icg1.a .
+ln -sf ../utils/lib_linux_ifc_15.0.2/libutils-icg1.a .
-Line 84:
+Line 102:
-ln -sf ../utils/mod_linux_ifc_15.0.0/* .
+ln -sf ../utils/mod_linux_ifc_15.0.2/* .
-Line 88:
+Line 106:
+}}}