Install Libraries on JURECA (with Stages/2016a)
The libraries used by CLaMS are installed in directory /homec/jicg11/jicg1108
load older software stage
module purge module use /usr/local/software/jureca/OtherStages module load Stages/2016a module load intel-para module load netCDF-Fortran
create directories
Create directories for libraries and modules
mkdir ~/clams_lib_2016a mkdir ~/clams_mod_2016a
qhull
Possibly the name of the C-routine qhull_dll in file unix.c must be adjusted: for gcc it must be qhull_dll_ !
cd ~/qhull make new mv libqhull.a libqhull_gcc4.9.3.a cd ~/clams_lib_2016a ln -sf ../qhull/libqhull_gcc4.9.3.a ./libqhull.a cd ~ chmod -R 755 qhull
numrec
cd ~/numrec-f90 mkdir lib_ifort16.0.2 mkdir mod_ifort16.0.2 mkdir obj_ifort16.0.2
in Makefile.numrec:F90 = ifort objDir = obj_ifort16.0.2 modDir = mod_ifort16.0.2 libDir = lib_ifort16.0.2
make -f Makefile.numrec new
The following error occurs:
catastrophic error: **Internal compiler error: internal abort** Please report this error along with the circumstances in which it occurred in a Software Problem Report. Note: File and line given may not be explicit cause of this error. compilation aborted for src/sprsin.f90 (code 1)=> in Makefile.numrec: sprsin removed from progfilelist !!!
cd ~/clams_lib_2016a ln -sf ../numrec-f90/lib_ifort16.0.2/libnumrec.a . cd ~/clams_mod_2016a ln -sf ../numrec-f90/mod_ifort16.0.2/nr.mod . ln -sf ../numrec-f90/mod_ifort16.0.2/nrtype.mod . ln -sf ../numrec-f90/mod_ifort16.0.2/nrutil.mod . cd ~ chmod -R 755 numrec-f90
netcdf
- Netcdf is installed on Jureca for different C and Fortran compiler versions.
- Load netcdf module:
module load netCDF-Fortran
- If the netcdf module is loaded, "ncdump" and "ncgen" can be used and compilation of programs using netcdf is possible (without specifying any library or include paths).
- Compile Fortran program with NetCDF:
ifort -o progname progname.f90 -lnetcdff -lnetcdf -lhdf5_hl -lhdf5 -lz
- After loading the netcdf module the following environment variables are expanded:
PATH includes directory with netcdf binaries (ncdump)
CPATH includes directory with include-files and netcdf-modules
LD_LIBRARY_PATH includes directories with all needed libraries (netcdf, hdf5, zlib etc)
utils
- Changes is ~/utils/mkincl/config/config.Linux_ifc:
libDir := $(baseDir)/clams_lib_2016a modDir := $(baseDir)/clams_mod_2016a
cd ~/utils make clean make theLibrary cd ~/clams_lib_2016a ln -sf ../utils/lib_linux_ifc_16.0.2/libutils-icg1.a . cd ~/clams_mod_2016a ln -sf ../utils/mod_linux_ifc_16.0.2/* . cd ~ chmod -R 755 utils
use older software stage in CLaMS
- Changes is ~/clams/mkincl/config/config.Linux_ifc:
libDir := $(baseDir)/clams_lib_2016a modDir := $(baseDir)/clams_mod_2016a